Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs77578012 chr20:61608337 C/G 0.000183 108 11.67 20.27 0 KM Plot
LAML rs77579349 chr6:34480473 C/A 0.000116 106 16.3 8.1 0 KM Plot
LAML rs77586995 chr2:174126244 C/T 0.000156 110 16.3 11.67 0 KM Plot
LAML rs77636723 chr5:25935090 C/G 0.000145 111 15.17 16.17 0 KM Plot
LAML rs7766802 chr6:127709871 T/G 1.9E-5 110 0.98 16.23 15.17 KM Plot
LAML rs77712395 chr16:71584527 TA/T 0.000186 109 15.17 16.23 0 KM Plot
LAML rs77713013 chr7:105149404 G/A 0.00015 110 16.17 13.1 0 KM Plot
LAML rs7771923 chr6:127675774 T/C 1.86E-5 111 0.98 16.27 15.17 KM Plot
LAML rs7773484 chr6:127670779 T/C 1.86E-5 111 0.98 16.27 15.17 KM Plot
LAML rs7774468 chr6:127592501 G/C 2.29E-5 110 0.98 16.23 15.17 KM Plot
LAML rs7775493 chr6:127615000 C/A 1.86E-5 111 0.98 16.27 15.17 KM Plot
LAML rs7776136 chr6:127638348 A/T 1.86E-5 111 0.98 16.27 15.17 KM Plot
LAML rs77777032 chr13:114625889 T/C 4.7E-7 111 13.1 19.82 0.5 KM Plot
LAML rs7778867 chr7:46237040 C/T 0.000121 111 15.7 9.63 0 KM Plot
LAML rs7781127 chr7:135661332 A/G 7.36E-5 111 13.15 28.93 0 KM Plot